Phenix
PHENIX is a software suite for automated macromolecular structure determination that can rapidly arrive at an initial partial model of a structure without significant human intervention, given moderate resolution and good quality data. This has been made possible by the development of novel algorithms for structure determination, maximum-likelihood molecular replacement (PHASER), heavy-atom search (HySS), template and pattern-based automated model-building (RESOLVE), automated macromolecular refinement (phenix.refine), and iterative model-building, density modification and refinement that can operate at moderate resolution (RESOLVE, AutoBuild). These algorithms are based on a set of crystallographic libraries that have been built and made available to the community.
Website | https://www.phenix-online.org/ |
Licenses | GNU Lesser General Public License 2.1 |
Categories | Data analysis Crystallography Macromolecular Crystallography |
Software Requirements | - |
Hardware Requirements | - | Platforms | Mac OS Linux Windows |
Languages | Python |
Input Formats | There are no input formats associated to this software. |
Output Formats | There are no output formats associated to this software. |
Contact email | help@phenix-online.org |
How-to | |
Installed on the central cluster (rnice) and runnable via: |
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Documentation / Tutorials | |
References | |
Acta Cryst. D66, 213-221, 2010) P. D. Adams, P. V. Afonine, G. Bunkóczi, V. B. Chen, I. W. Davis, N. Echols, J. J. Headd, L.-W. Hung, G. J. Kapral, R. W. Grosse-Kunstleve, A. J. McCoy, N. W. Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart, "PHENIX: a comprehensive Python-based system for macromolecular structure solution." |
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Instruments | ID23-1 (ESRF) ID23-2 (ESRF) ID29 (ESRF) ID30A-1 (ESRF) ID30A-3 (ESRF) ID30A-2 (ESRF) ID30B (ESRF) |